Publications

2020

Catalina A. Montes, Adrian Roy L. Valdez

International Journal of Smart Grid and Clean Energy 9(1), 2020. 212-217. DOI: 10.12720/sgce.9.1.212-217

2019

John Justine Villar, Patrick Vincent Lubenia, Eduardo Mendoza, Carlene P. C. Pilar-Arceo

Philippine Journal of Science 148(3), 2019. 523-533.


Conformational analysis of backbone-sidechain interactions in selected amino acid diamide 5D conformational potential energy surfaces

John Justine Villar

Proceedings of International Conference of Molecular Systems Biology, De La Salle University, Manila, Philippines, October 28-31, 2019


Single Rail Train Dispatch Time Optimization Under Static Demand and Fixed Train Capacity

Virgilio Ma. Ramos, Jebus Edrei Taguiam, John Justine Villar and Adrian Roy Valdez

Proceedings of 13th International Conference of the Eastern Asia Society for Transportation Studies, Colombo, Sri Lanka, September 9-12, 2019


Sequential Intermediate Destination Approach to Route Choice Set Generation

Anjilo Carigma, Mel Francis Eden, John Justine Villar and Adrian Roy Valdez

Proceedings of 13th International Conference of the Eastern Asia Society for Transportation Studies, Colombo, Sri Lanka, September 9-12, 2019


Discrete Optimization for Path Generation Using Parallel Computing

Anjilo Carigma, Mel Francis Eden, John Justine Villar and Adrian Roy Valdez

Proceedings of 13th International Conference of the Eastern Asia Society for Transportation Studies, Colombo, Sri Lanka, September 9-12, 2019


Modified Greedy Algorithm for Game-Theoretic Traffic Assignment

Patrick Rollan and Adrian Roy Valdez

Proceedings of 13th International Conference of the Eastern Asia Society for Transportation Studies, Colombo, Sri Lanka, September 9-12, 2019


Ab Initio Construction and Conformational Analysis of Amino Acid Potential Energy Hypersurfaces: Application to Peptide Structure Prediction

John Justine Villar

Proceedings of 2019 Annual PAASE Meeting and Symposium, Century Park, Manila, Philippines, May 23-24,2019

2018

Catalina A. Montes, Adrian Roy L. Valdez

Procedia Computer Science 140, 2018. 56-63.


Lois Foo, Attila Surányi, Andrea Guljas, Milán Szőri, John Justine Villar, Béla Viskolcz, Imre G.Csizmadia, Anita Rágyanszki, Béla Fiser

Molecular Astrophysics, 2018 (in press). DOI: 10.1016/j.molap.2018.06.002 [IF: 2.09]


John Justine Villar, Logine Negm, Anita Rágyanszki, David Setiadi, Adrian Roy Valdez, Béla Viskolcz and Imre G. Csizmadia

Canadian Journal of Chemistry 96(10), 2018. 912-921. DOI: 10.1139/cjc-2018-0017 [IF 1.08]


John Justine Villar, Adrian Roy Valdez, David Setiadi, Béla Viskolcz, Imre G. Csizmadia and Anita Rágyanszki

Canadian Journal of Chemistry 96(1), 2018. 58-71. DOI: 10.1139/cjc-2017-0571 [IF 1.08]

2017

Jaymar Soriano, Takatomi Kubo, Takao Inoue, Hiroyuki Kida, Toshitaka Yamakawa, Michiyasu Suzuki, Kazushi Ikeda

PLOS Computational Biology 13(10), 2017. e1005736. DOI: 10.1371/journal.pcbi.1005736


John Justine Villar, Adrian Roy Valdez, David Setiadi, Béla Fiser, Béla Viskolcz, Imre G. Csizmadia and Anita Rágyanszki

Canadian Journal of Chemistry 95(8), 2017. 830-836


Jerome Cary Beltran, Catalina Montes, John Justine Villar and Adrian Roy Valdez

Philippine Science Letters 10(1), 2017. 50-57


Computational Modeling and Analysis of Backbone-Sidechain Interactions in Selected Amino Acid Diamide 5D Conformational Potential Energy Surfaces

John Justine Villar, Adrian Roy Valdez, David Setiadi, Béla Fiser, Béla Viskolcz, Imre G. Csizmadia and Anita Rágyanszki

Proc. 7th Visegrad Symposium on Structural Systems Biology (VSSSB 2017), 21-24 June 2017, Nove Hrady, Czech Republic


Dimension Reduction in Conformational Analysis: Mathematical Modeling of Amino Acid Diamide Potential Energy Surfaces

John Justine Villar, Anita Ragyánszki, Adrian Roy Valdez, David Setiadi, Belá Viskolcz and Imre G. Csizmadia

Proc. Kemometria és Molekulamodellezés Munkabizottsága-QSAR és Modellezési Szakcsoportja Szimposia (KeMoMo-QSAR 2017), 1-2 June 2017, Szeged, Hungary


On Extending the Original Minority Game with Tokens and Non-Binary Actions

Catalina Montes, Adrian Roy Valdez

Proc. 2017 Mathematical Society of the Philippines Annual Convention, 29-31 May 2017, Legazpi City, Philippines


Resilient Sensor Placement in Water Distribution Networks using Multi-objective Evolutionary Algorithms

Isabelle Tingzon

Proc. 2017 Mathematical Society of the Philippines Annual Convention, 29-31 May 2017, Legazpi City, Philippines


A Shockwave-Inducing Car-Following Model

Kevin Oliver Fernandez, Kirzten Cassielle Marquez

Proc. 2017 Mathematical Society of the Philippines Annual Convention, 29-31 May 2017, Legazpi City, Philippines (Poster Presentation)


A Spatio-temporal Data Analysis Framework for Communicable Diseases

Abigail Althea Antonio, Jacob Angelo Torres, Adrian Roy Valdez

Proc. 2017 Mathematical Society of the Philippines Annual Convention, 29-31 May 2017, Legazpi City, Philippines (Poster Presentation)

2016

A Mathematical Model for Analytical Fitting of Amino Acid Diamide Conformational Potential Energy Surfaces

John Justine Villar, Anita Rágyanszki, David Setiadi, Béla Viskolcz, Imre G. Csizmadia and Adrian Roy Valdez

Proceedings of 9th International Conference on Environmental and Computer Science, 24-26 September 2016, Toronto, Canada


Post-disaster Regeneration of Mangroves

Vena Pearl Boñgolan, Severino Salmo III, J. Stephen Mariano and Franklin David Ang

Proceedings of the Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China


Ultradiscretization of the Burger's Equation for Landslide Modeling

Lee Javellana and Vena Pearl Boñgolan

Proceedings of the Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China


Storm Surge Simulation in the Philippine Archipelago Using 3D ADCIRC + SWAN

Joshua Frankie Rayo, Guenevere Kay Gutierrez, Ace Talibong, Dustin Edric Ricio and Vena Pearl Boñgolan

Proceedings of the Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China


Effects of Time-Correlated Stochastic Boundary Conditions in Storm Surge Modeling

Dustin Edric Ricio and Vena Pearl Boñgolan

Proceedings of the Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China

2015

A Scenario and Sensitivity Analysis for Flooding Vulnerability Using Genetic Algorithms

V.P. Bongolan, O. Terranova, E.N. Apostol, J.K Cruz

Proceedings of the Asia Oceania Geosciences Society 12th Annual Meeting, 2-7 August 2015, Singapore


On Incorporating Core-Attachment Scheme for Protein Complex Detection on Weighted Protein-Protein Interaction Networks

Jerome Cary Beltran, Catalina Montes, John Justine Villar, Jaymar Soriano, and Adrian Roy Valdez

Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines


Storm Surge Modeling in the Philippines Using ADCIRC+SWAN through Parallel Computing

Tricia Mae Esguerra, Ryan Anthony Jacinto, Joshua Frankie Rayo, Dustin Edric Ricio, and Vena Pearl Bongolan

Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines


On Protein Structure Prediction using the Hydrophobic-Polar Model on a Tetrahedral Lattice

Ryan Paul Gozum, Kristoffer Marion Mendoza, John Justine Villar, Jaymar Soriano, and Adrian Roy Valdez

Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines


Modeling and Simulation of Filipino Driving

Elemar Teje and Adrian Roy Valdez

Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines


Portfolio Optimization in a Regime Switching Model

Adrian Roy Valdez and Tiziano Vargiolu

Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines


A Hybrid Method for Detecting Protein Complexes in Weighted Protein-Protein Interaction Networks

Jerome Cary Beltran, Catalina Montes, John Justine Villar, Jaymar Soriano, and Adrian Roy Valdez

Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines


A Scenario Analysis for Flooding Vulnerability using Genetic Algorithm

Vena Pearl Boñgolan, Oreste Terranova, Edward Nataniel Apostol, and Joshua Kevin Cruz

Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines


Calibration of a Rule-Based Computational Model of Photocatalytic Hydrogen Production using Cadmium Sulfide Catalyst with Sulfide and Sulfite Reagents

Roy Vincent L. Canseco, Vena Pearl Bongolan, Hyacinth Mae G. Tambago, and Rizalinda L. De Leon

Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines


A Branch-Bound Method for the 3D HP Protein Folding Model over a Tetrahedral Lattice

Ryan Paul Gozum, Kristoffer Marion Mendoza, John Justine Villar, Jaymar Soriano, and Adrian Roy Valdez

Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines


Ultradiscrete Landslides

Lee Javellana and Vena Pearl Boñgolan

Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines


Storm Surge Modeling in the Philippines Using ADCIRC+SWAN through Parallel Computing

Dustin Edric Ricio, Tricia Mae Esguerra, Ryan Anthony Jacinto, Joshua Frankie Rayo, Pablo Manalastas, and Vena Pearl Bongolan

Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines


Discrimination of Class Aves Families Using Codon Counts From Unaligned COI Sequences

Jaymar Soriano, Adrian Roy Valdez, and Ian Kendrick Fontanilla

Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines


Modeling and Simulation of Filipino Driving

Elemar Teje, Alvin Abala, Christopher Rosario, Harvey Ian Arbas, and Adrian Roy Valdez

Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines


Analysis of Signalized Intersections with Varied Traffic Conditions

Joshua Martin Villano, Mark Paolo Navata, Jaymar Soriano, and Adrian Roy Valdez

Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines

2014

V.P. Bongolan, G. Iovine, R. Rongo, W. Spataro, D. D'Ambrosio, G. Spingola

presented at AOGS 11th Annual Meeting, 28 July - 01 August 2014, Royton Sapporo Hotel, Japan

(co-convenor of session IG01). Under a Faculty Research Dissemination Grant of ERDT.


Vena Pearl Bongolan

presented at ICT Asia, June 4-6 2014, LIPI, Jakarta

Sponsored by the Embassies of France, Manila and Jakarta.


Vena Pearl Bongolan, Valeria Lupiano,Donato D’Ambrosio, Rocco Rongo, William Spataro & Giulio Iovine

Done at the University of Calabria under a Visiting Research grant from the ERDT Consortium of the Department of Science and Technology, Republic of the Philippines.


Vena Pearl Boñgolan, Donato D’Ambrosio, Giulio Iovine, Rocco Rongo, William Spataro, Giuseppe Spingola

Done at the University of Calabria under a Visiting Research grant from the ERDT Consortium of the Department of Science and Technology, Republic of the Philippines.


Robust Design via NSGA-II using Latin Hypercube Sampling Applied to Structural Beams

Jaymar Soriano, Laurent Dumas

Journal of Emerging Trends in Computing and Information Science, March 2014.

2013

John Justine Villar and Adrian Roy Valdez

Theory and Practice of Computation. PICT Vol 7, Springer Japan, 2013. pp. 107 - 115.


Vena Pearl Bongolan, Valeria Lupiano, Donato D’Ambrosio, Rocco Rongo, William Spataro, and Giulio Iovine

European Geosciences Union General Assembly, April 7-12, 2013, Vienna


Vena Pearl Bongolan, Florencio Ballesteros, Karessa Alexandra Baritua, and Marie Junne Santos

European Geosciences Union General Assembly, April 7-12, 2013, Vienna


Jaymar Soriano, Ric Sapasap, Ted Chua, Nathan Santi, Ian Fontanilla and Adrian Roy Valdez

International Conference of Artificial Intelligence in Computer Science. Langkawi, Malaysia. November 2013.


Jaymar Soriano, Ryan Rondon, Angelo Meneses, Melissa Cardenas, Sandra Lim-Yap and Adrian Roy Valdez

International Conference of Artificial Intelligence in Computer Science. Langkawi, Malaysia. November 2013.

2012

Canseco, Roy Vincent L.; Bongolan, Vena Pearl

TENCON 2012 - 2012 IEEE Region 10 Conference , vol., no., pp.1-5, 19-22 Nov. 2012

doi: 10.1109/TENCON.2012.6412278


Jaymar Soriano and Laurent Dumas

TENCON (IEEE Region 10) 2012 Conference, Nov. 2012


Canseco, R. V. L., Bongolan, P. V., Tolod, K. R., & De Leon, R. L. (2012).

Proceedings of 19th Regional Symposium of Chemical Engineering.

2011

Karessa Alexandra O. Baritua, Marie Junne Santos and Vena Pearl Bongolan

Oral presentation at Model 2011, Oct. 20-22, Silliman University, Dumaguete, Philippines.


V.P. Bongolan, J. Duan, and G. Skountrianos

Presented at the Second International Conference on Random Dynamical Systems,

Nanjing Normal University, P.R. China, June 20-22, 2011, with a travel grant from DOST through the ERDT Consortium.


Modeling Vulnerability: a Genetic Algorithms Framework for Flood Minimization

Joyce Anne Banting, Aina Marie Olaes, Vena Pearl Bongolan, Charlymagne R. Aquino, and Florencio Ballesteros, Jr.

a poster presentation at the 11th Philippine Computing Science Congress (PCSC 2011), 4-5 March, Ateneo de Naga University, Philippines.


Marie Julliene Camille Sapuay, Fitz Patrick Galanida, Vena Pearl Bongolan

an oral presentation at the 3rd AUN/SEED-Net Regional Conference on Global Environment, 21-22 February, 2011, Kuala Lumpur.

2010

A.P. Mendoza, A.R.L. Valdez, C.P. Arceo

an oral presentation at the 2010 International Conference on Computer Software and Modeling (ICCSM 2010) in Manila, Philippines, 4-5 December , 2010


Aina Olaes, Joyce Banting, Vena Pearl Bongolan, Charlymagne R. Aquino, and Florencio Ballesteros, Jr.

an oral presentation at the 3rd Asean Civil and 3rd Asean Environmental Engineering Conferences, Manila, 11-12 November, 2010.


Joyce Banting, Aina Olaes, Vena Pearl Bongolan, Charlymagne R. Aquino, and Florencio Ballesteros, Jr.

an oral presentation at the 8th National Conference on IT Education (NCITE 2010) Boracay, Philippines, 20-23 October 2010.


A.P. Mendoza, A.R.L. Valdez, C.P. Arceo

an oral presentation at the 8th National Conference on IT Education (NCITE 2010) Boracay Island, Malay, Aklan, 20-23 October 2010.