Welcome to SCL!




SCL is one of the research laboratories under the 
Department of Computer Science, University of the Philippines Diliman
interested in the construction of mathematical models
and numerical solution techniques,
as well as the use of computing infrastructures,
to analyze and solve
scientific, social scientific and engineering problems.




NEWS / ANNOUNCEMENTS


Two Papers Received International Publication Award from UP OVPAA
1 February 2018


The following papers received the 2018 International Publication Award from UP Office of the Vice President for Academic Affairs:

Villar JJSValdez ARL, Setiadi DH, Fiser B, Viskolcz B, Csizmadia IG, Rágyanszki A. Dimension Reduction in Conformational Analysis: A Two-Rotor Mathematical Model of Amino Acid Diamide Conformational Potential Energy SurfaceCanadian Journal of Chemistry 95(8), 2017. 830-836.

Villar JJS, Valdez ARL, Setiadi DH, Viskolcz B, Csizmadia IG, Rágyanszki A. An Improved Two-Rotor Function for Conformational Potential Energy Surfaces of 20 Amino Acid Diamides
Canadian Journal of Chemistry 96(1), 2018. 58-71. 

Congratulations!



New Members
8 August 2017


SCL welcomes the new members for AY 2017-2018:

- BS CS
  • Aimee Nicole Gonzales
  • Juan Miguel Manalo
  • Gabriele Marie Torres
- MS CS
  • Anjilo Carigma
  • Elijah Jesus Puaben
  • Brandi Quijano
  • Patrick Rollan


SCL Members Presented Their Researches in Various International Conferences
12 August 2017


John Justine Villar, a PhD student, gave an oral presentation about his research on mathematical peptide conformational analysis in the 7th Visegrad Symposium on Structural Systems Biology (VSSSB 2017), held at Nove Hrady, Czech Republic last 21-24 June 2017. He also supervised two research students from University of Toronto who also participated individually as poster presenters in the said conference. The two posters were products of their respective research outputs during the 12th Annual European Molecular Computational Summer School in Miskolc, Hungary. 

The complete list of publications can be viewed here.



RECENT PUBLICATIONS


A Prelude to Building Mathematical Models for Polypeptide Folding: Analysis on the Conformational Potential Energy Hypersurface Cross-Sections of N-Acetyl-Glycyl-Glycine-N'-Methylamide
John Justine Villar, Logine Negm, Anita Rágyanszki, 
David Setiadi, 
Adrian Roy Valdez,
 
Béla
 Viskolcz and 
Imre G. Csizmadia
Canadian Journal of Chemistry, 2018 (in press). DOI: 10.1139/cjc-2018-0017

An Improved Two-Rotor Function for Conformational Potential Energy Surfaces of 20 Amino Acid Diamides
John Justine Villar, 
Adrian Roy Valdez,
 David Setiadi, 
Béla
 Viskolcz, 
Imre G. Csizmadia
 and 
Anita Rágyanszki
Canadian Journal of Chemistry 96(1), 2018. 58-71. DOI: 10.1139/cjc-2017-0571

Jaymar Soriano, Takatomi Kubo, Takao Inoue, Hiroyuki Kida, Toshitaka Yamakawa, Michiyasu Suzuki, Kazushi Ikeda
PLOS Computational Biology 13(10), 2017. e1005736. DOI: 10.1371/journal.pcbi.1005736

John Justine Villar, 
Adrian Roy Valdez,
 David Setiadi, 
Béla Fiser, 
Béla
 Viskolcz, 
Imre G. Csizmadia
 and 
Anita Rágyanszki
Canadian Journal of Chemistry 95(8), 2017. 830-836. DOI: 10.1139/cjc-2017-0124

Jerome Cary Beltran, Catalina Montes, John Justine Villar and 
Adrian Roy Valdez
Philippine Science Letters 10(1), 2017. 50-57

Computational Modeling and Analysis of Backbone-Sidechain Interactions in Selected Amino Acid Diamide 5D Conformational Potential Energy Surfaces
John Justine Villar, 
Adrian Roy Valdez,
 David Setiadi, 
Béla Fiser, 
Béla
 Viskolcz, 
Imre G. Csizmadia
 and 
Anita Rágyanszki
Proc. 7th Visegrad Symposium on Structural Systems Biology (VSSSB 2017), 21-24 June 2017, Nove Hrady, Czech Republic

Dimension Reduction in Conformational Analysis: 
Mathematical Modeling of Amino Acid Diamide Potential Energy Surfaces
John Justine Villar, 
Adrian Roy Valdez,
 David Setiadi, 
Béla Fiser, 
Béla
 Viskolcz, 
Imre G. Csizmadia
  and 
Anita Rágyanszki
Proc. Kemometria és Molekulamodellezés Munkabizottsága-QSAR és Modellezési Szakcsoportja Szimposia (KeMoMo-QSAR 2017), 1-2 June 2017, Szeged, Hungary

On Extending the Original Minority Game with Tokens and Non-Binary Actions

Catalina Montes, 
Adrian Roy Valdez
Proc. 2017 Mathematical Society of the Philippines Annual Convention, 
29-31 May 2017,
 Legazpi City, Philippines

Resilient Sensor Placement in Water Distribution Networks using Multi-objective Evolutionary Algorithms
Isabelle Tingzon
Proc. 2017 Mathematical Society of the Philippines Annual Convention, 
29-31 May 2017,
 Legazpi City, Philippines

A Shockwave-Inducing Car-Following Model 
Kevin Oliver Fernandez, Kirzten Cassielle Marquez 
Proc. 2017 Mathematical Society of the Philippines Annual Convention, 
29-31 May 2017,
 Legazpi City, Philippines 
(Poster Presentation)

A Spatio-temporal Data Analysis Framework for Communicable Diseases
Abigail Althea Antonio, Jacob Angelo Torres, Adrian Roy Valdez
Proc. 2017 Mathematical Society of the Philippines Annual Convention, 
29-31 May 2017,
 Legazpi City, Philippines 
(Poster Presentation)