Welcome to SCL!




SCL is one of the research laboratories under the 
Department of Computer Science, University of the Philippines Diliman
interested in the construction of mathematical models
and numerical solution techniques,
as well as the use of computing infrastructures,
to analyze and solve
scientific, social scientific and engineering problems.






NEWS / ANNOUNCEMENTS


New Members
8 August 2016


SCL welcomes the new members for AY 2016-2017:

Undergraduate
  • Abigail Althea Antonio
  • Camille Grace Bacister
  • Alexis Julia Canaria
  • Christelle Anne Divina
  • Kevin Oliver Fernandez
  • Vincent Paul Fiestada
  • Andrew Vince Lorbis
  • Kirzten Casielle Marquez
  • Jann Kevin Rayco
  • Jacob Angelo Torres
Graduate
  • Sebastian Ibañez (PhD)



SCL Members Presented Their Researches in Various International Conferences
6 August 2016

(J.J. Villar, far right, with the UToronto Chemistry students)

John Justine Villar, a PhD student member of SCL, gave an oral presentation about his research on mathematical peptide conformational analysis in the 6th Visegrad Symposium on Structural Systems Biology (VSSSB 2016), held at Warsaw, Poland last 19-21 June 2016. He also collaborated with 7 chemistry students from University of Toronto who also participated individually as poster presenters in the said conference.

(L-R: L. Javellana, J. F. Rayo, Dr. V. P. Boñgolan, 
A. Talibong, G. Gutierrez)

Moreover, Dr. Vena Pearl Boñgolan, together with her advisees, MS students Lee Javellana and Joshua Frank Rayo, and undergraduate students Ace Talibong and Gwenevere Kay Gutierrez, presented their researches related to disaster risk modeling at the recent Asia Oceania Geosciences Society 13th Annual Meeting at Beijing, China last July 31 to August 5. 

The complete list of publications can be viewed here.




SCL PPIN Team Won Second Place in the UPC 2015
11 June 2015


SCL congratulates the PPIN Mining Group (Jerome Cary Beltran and Catalina Montes), with project entitled "A Hybrid Method for Protein Complex Detection on Weighted Protein-Protein Interaction Networks") for bagging Second Prize in the UP College of Engineering Undergraduate Project Competition 2015 held at Maynilad AVR, Melchor Hall last 11 June 2015.

SCL also congratulates the Storm Surge Group (Joshua Frank Rayo, Tricia Mae Esguerra and Ryan Anthony Jacinto), with project entitled "Storm Surge Modeling in the Philippines using ADCIRC+SWAN through Parallel Computing") for one of the DCS representatives in the College-level screening of UPC 2015.

The lab is proud of you!

RECENT PUBLICATIONS


A Mathematical Model for Analytical Fitting of Amino Acid Diamide Conformational Potential 
Energy Surfaces
John Justine Villar, Anita Rágyanszki, David Setiadi, Béla Viskolcz, 
Imre G. Csizmadia
  and 
Adrian Roy Valdez 
Proceedings of 9th International Conference on Environmental and Computer Science, 24-26 September 2016, Toronto, Canada

Post-disaster Regeneration of Mangroves
Vena Pearl Boñgolan, Severino Salmo III, J. Stephen Mariano and Franklin David Ang
Proceedings of Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China

Ultradiscretization of the Burger's Equation for Landslide Modeling
Lee Javellana and Vena Pearl Boñgolan
Proceedings of Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China

Storm Surge Simulation in the Philippine Archipelago Using 3D ADCIRC + SWAN
Joshua Frankie Rayo Guenevere Kay Gutierrez, Ace Talibong, Dustin Edric Ricio and Vena Pearl Boñgolan
Proceedings of Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China

Effects of Time-Correlated Stochastic Boundary Conditions in Storm Surge Modeling
Dustin Edric Ricio and Vena Pearl Boñgolan
Proceedings of Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China

Mathematical Representation of 20 Amino Acid Diamide Relaxed Conformational Potential Energy Surfaces
John Justine Villar, Anita Ragyánszki, Adrian Roy Valdez, David Setiadi, Belá Viskolcz and Imre G. Csizmadia
Proceedings of 6th Visegrad Symposium on Structural Systems Biology, 19-21 June 2016, Warsaw, Poland

3D Printing Optimization Through Projection-Assisted Parameter Search (PAPS)
Niña Kamille Quiazon, Sarah Samonte and Vena Pearl Bongolan
Proceedings of the Mathematical Society of the Philippines Annual Convention 2016, 30-31 May 2016, Cebu City, Philippines

Off-lattice Protein Structure Prediction on 3D Hydrophobic-Polar Side-Chain Model using Parallel Simulated Annealing
Gerald Roy Campañano, Francis Jonathan Lopez, Rowel Ventura, John Justine Villar and Adrian Roy Valdez
Proceedings of the Mathematical Society of the Philippines Annual Convention 2016, 30-31 May 2016, Cebu City, Philippines (accepted)

Analysis of Models for Analytical Fitting of Conformational Potential Energy Surfaces
John Justine Villar, Anita Ragyánszki, Adrian Roy Valdez, David Setiadi, Belá Viskolcz and Imre G. Csizmadia
Proc. Kemometria és Molekulamodellezés Munkabizottsága-QSAR és Modellezési Szakcsoportja Szimposia (KeMoMo-QSAR 2016), 12-13 May 2016, Miskolc, Hungary