Publications
2020
Catalina A. Montes, Adrian Roy L. Valdez
International Journal of Smart Grid and Clean Energy 9(1), 2020. 212-217. DOI: 10.12720/sgce.9.1.212-217
2019
John Justine Villar, Patrick Vincent Lubenia, Eduardo Mendoza, Carlene P. C. Pilar-Arceo
Philippine Journal of Science 148(3), 2019. 523-533.
Conformational analysis of backbone-sidechain interactions in selected amino acid diamide 5D conformational potential energy surfaces
John Justine Villar
Proceedings of International Conference of Molecular Systems Biology, De La Salle University, Manila, Philippines, October 28-31, 2019
Single Rail Train Dispatch Time Optimization Under Static Demand and Fixed Train Capacity
Virgilio Ma. Ramos, Jebus Edrei Taguiam, John Justine Villar and Adrian Roy Valdez
Proceedings of 13th International Conference of the Eastern Asia Society for Transportation Studies, Colombo, Sri Lanka, September 9-12, 2019
Sequential Intermediate Destination Approach to Route Choice Set Generation
Anjilo Carigma, Mel Francis Eden, John Justine Villar and Adrian Roy Valdez
Proceedings of 13th International Conference of the Eastern Asia Society for Transportation Studies, Colombo, Sri Lanka, September 9-12, 2019
Discrete Optimization for Path Generation Using Parallel Computing
Anjilo Carigma, Mel Francis Eden, John Justine Villar and Adrian Roy Valdez
Proceedings of 13th International Conference of the Eastern Asia Society for Transportation Studies, Colombo, Sri Lanka, September 9-12, 2019
Modified Greedy Algorithm for Game-Theoretic Traffic Assignment
Patrick Rollan and Adrian Roy Valdez
Proceedings of 13th International Conference of the Eastern Asia Society for Transportation Studies, Colombo, Sri Lanka, September 9-12, 2019
Ab Initio Construction and Conformational Analysis of Amino Acid Potential Energy Hypersurfaces: Application to Peptide Structure Prediction
John Justine Villar
Proceedings of 2019 Annual PAASE Meeting and Symposium, Century Park, Manila, Philippines, May 23-24,2019
2018
Catalina A. Montes, Adrian Roy L. Valdez
Procedia Computer Science 140, 2018. 56-63.
Lois Foo, Attila Surányi, Andrea Guljas, Milán Szőri, John Justine Villar, Béla Viskolcz, Imre G.Csizmadia, Anita Rágyanszki, Béla Fiser
Molecular Astrophysics, 2018 (in press). DOI: 10.1016/j.molap.2018.06.002 [IF: 2.09]
John Justine Villar, Logine Negm, Anita Rágyanszki, David Setiadi, Adrian Roy Valdez, Béla Viskolcz and Imre G. Csizmadia
Canadian Journal of Chemistry 96(10), 2018. 912-921. DOI: 10.1139/cjc-2018-0017 [IF 1.08]
John Justine Villar, Adrian Roy Valdez, David Setiadi, Béla Viskolcz, Imre G. Csizmadia and Anita Rágyanszki
Canadian Journal of Chemistry 96(1), 2018. 58-71. DOI: 10.1139/cjc-2017-0571 [IF 1.08]
2017
Jaymar Soriano, Takatomi Kubo, Takao Inoue, Hiroyuki Kida, Toshitaka Yamakawa, Michiyasu Suzuki, Kazushi Ikeda
PLOS Computational Biology 13(10), 2017. e1005736. DOI: 10.1371/journal.pcbi.1005736
John Justine Villar, Adrian Roy Valdez, David Setiadi, Béla Fiser, Béla Viskolcz, Imre G. Csizmadia and Anita Rágyanszki
Canadian Journal of Chemistry 95(8), 2017. 830-836
Jerome Cary Beltran, Catalina Montes, John Justine Villar and Adrian Roy Valdez
Philippine Science Letters 10(1), 2017. 50-57
Computational Modeling and Analysis of Backbone-Sidechain Interactions in Selected Amino Acid Diamide 5D Conformational Potential Energy Surfaces
John Justine Villar, Adrian Roy Valdez, David Setiadi, Béla Fiser, Béla Viskolcz, Imre G. Csizmadia and Anita Rágyanszki
Proc. 7th Visegrad Symposium on Structural Systems Biology (VSSSB 2017), 21-24 June 2017, Nove Hrady, Czech Republic
Dimension Reduction in Conformational Analysis: Mathematical Modeling of Amino Acid Diamide Potential Energy Surfaces
John Justine Villar, Anita Ragyánszki, Adrian Roy Valdez, David Setiadi, Belá Viskolcz and Imre G. Csizmadia
Proc. Kemometria és Molekulamodellezés Munkabizottsága-QSAR és Modellezési Szakcsoportja Szimposia (KeMoMo-QSAR 2017), 1-2 June 2017, Szeged, Hungary
On Extending the Original Minority Game with Tokens and Non-Binary Actions
Catalina Montes, Adrian Roy Valdez
Proc. 2017 Mathematical Society of the Philippines Annual Convention, 29-31 May 2017, Legazpi City, Philippines
Resilient Sensor Placement in Water Distribution Networks using Multi-objective Evolutionary Algorithms
Isabelle Tingzon
Proc. 2017 Mathematical Society of the Philippines Annual Convention, 29-31 May 2017, Legazpi City, Philippines
A Shockwave-Inducing Car-Following Model
Kevin Oliver Fernandez, Kirzten Cassielle Marquez
Proc. 2017 Mathematical Society of the Philippines Annual Convention, 29-31 May 2017, Legazpi City, Philippines (Poster Presentation)
A Spatio-temporal Data Analysis Framework for Communicable Diseases
Abigail Althea Antonio, Jacob Angelo Torres, Adrian Roy Valdez
Proc. 2017 Mathematical Society of the Philippines Annual Convention, 29-31 May 2017, Legazpi City, Philippines (Poster Presentation)
2016
A Mathematical Model for Analytical Fitting of Amino Acid Diamide Conformational Potential Energy Surfaces
John Justine Villar, Anita Rágyanszki, David Setiadi, Béla Viskolcz, Imre G. Csizmadia and Adrian Roy Valdez
Proceedings of 9th International Conference on Environmental and Computer Science, 24-26 September 2016, Toronto, Canada
Post-disaster Regeneration of Mangroves
Vena Pearl Boñgolan, Severino Salmo III, J. Stephen Mariano and Franklin David Ang
Proceedings of the Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China
Ultradiscretization of the Burger's Equation for Landslide Modeling
Lee Javellana and Vena Pearl Boñgolan
Proceedings of the Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China
Storm Surge Simulation in the Philippine Archipelago Using 3D ADCIRC + SWAN
Joshua Frankie Rayo, Guenevere Kay Gutierrez, Ace Talibong, Dustin Edric Ricio and Vena Pearl Boñgolan
Proceedings of the Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China
Effects of Time-Correlated Stochastic Boundary Conditions in Storm Surge Modeling
Dustin Edric Ricio and Vena Pearl Boñgolan
Proceedings of the Asia Oceania Geosciences Society 13th Annual Meeting, 31 July - 5 August 2016, Beijing, China
2015
A Scenario and Sensitivity Analysis for Flooding Vulnerability Using Genetic Algorithms
V.P. Bongolan, O. Terranova, E.N. Apostol, J.K Cruz
Proceedings of the Asia Oceania Geosciences Society 12th Annual Meeting, 2-7 August 2015, Singapore
On Incorporating Core-Attachment Scheme for Protein Complex Detection on Weighted Protein-Protein Interaction Networks
Jerome Cary Beltran, Catalina Montes, John Justine Villar, Jaymar Soriano, and Adrian Roy Valdez
Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines
Storm Surge Modeling in the Philippines Using ADCIRC+SWAN through Parallel Computing
Tricia Mae Esguerra, Ryan Anthony Jacinto, Joshua Frankie Rayo, Dustin Edric Ricio, and Vena Pearl Bongolan
Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines
On Protein Structure Prediction using the Hydrophobic-Polar Model on a Tetrahedral Lattice
Ryan Paul Gozum, Kristoffer Marion Mendoza, John Justine Villar, Jaymar Soriano, and Adrian Roy Valdez
Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines
Modeling and Simulation of Filipino Driving
Elemar Teje and Adrian Roy Valdez
Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines
Portfolio Optimization in a Regime Switching Model
Adrian Roy Valdez and Tiziano Vargiolu
Proceedings of the 2015 Mathematical Society of the Philippines Annual Convention, 18 - 19 May 2015, Laoag City, Philippines
A Hybrid Method for Detecting Protein Complexes in Weighted Protein-Protein Interaction Networks
Jerome Cary Beltran, Catalina Montes, John Justine Villar, Jaymar Soriano, and Adrian Roy Valdez
Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines
A Scenario Analysis for Flooding Vulnerability using Genetic Algorithm
Vena Pearl Boñgolan, Oreste Terranova, Edward Nataniel Apostol, and Joshua Kevin Cruz
Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines
Calibration of a Rule-Based Computational Model of Photocatalytic Hydrogen Production using Cadmium Sulfide Catalyst with Sulfide and Sulfite Reagents
Roy Vincent L. Canseco, Vena Pearl Bongolan, Hyacinth Mae G. Tambago, and Rizalinda L. De Leon
Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines
A Branch-Bound Method for the 3D HP Protein Folding Model over a Tetrahedral Lattice
Ryan Paul Gozum, Kristoffer Marion Mendoza, John Justine Villar, Jaymar Soriano, and Adrian Roy Valdez
Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines
Ultradiscrete Landslides
Lee Javellana and Vena Pearl Boñgolan
Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines
Storm Surge Modeling in the Philippines Using ADCIRC+SWAN through Parallel Computing
Dustin Edric Ricio, Tricia Mae Esguerra, Ryan Anthony Jacinto, Joshua Frankie Rayo, Pablo Manalastas, and Vena Pearl Bongolan
Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines
Discrimination of Class Aves Families Using Codon Counts From Unaligned COI Sequences
Jaymar Soriano, Adrian Roy Valdez, and Ian Kendrick Fontanilla
Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines
Modeling and Simulation of Filipino Driving
Elemar Teje, Alvin Abala, Christopher Rosario, Harvey Ian Arbas, and Adrian Roy Valdez
Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines
Analysis of Signalized Intersections with Varied Traffic Conditions
Joshua Martin Villano, Mark Paolo Navata, Jaymar Soriano, and Adrian Roy Valdez
Proceedings of the 8th Research Workshop on Modeling, Simulation and Scientific Computing in the Philippines (MODEL 2015), 19 – 20 January 2015, Manila, Philippines
2014
V.P. Bongolan, G. Iovine, R. Rongo, W. Spataro, D. D'Ambrosio, G. Spingola
presented at AOGS 11th Annual Meeting, 28 July - 01 August 2014, Royton Sapporo Hotel, Japan
(co-convenor of session IG01). Under a Faculty Research Dissemination Grant of ERDT.
Vena Pearl Bongolan
presented at ICT Asia, June 4-6 2014, LIPI, Jakarta
Sponsored by the Embassies of France, Manila and Jakarta.
Vena Pearl Bongolan, Valeria Lupiano,Donato D’Ambrosio, Rocco Rongo, William Spataro & Giulio Iovine
Done at the University of Calabria under a Visiting Research grant from the ERDT Consortium of the Department of Science and Technology, Republic of the Philippines.
Vena Pearl Boñgolan, Donato D’Ambrosio, Giulio Iovine, Rocco Rongo, William Spataro, Giuseppe Spingola
Done at the University of Calabria under a Visiting Research grant from the ERDT Consortium of the Department of Science and Technology, Republic of the Philippines.
Robust Design via NSGA-II using Latin Hypercube Sampling Applied to Structural Beams
Jaymar Soriano, Laurent Dumas
Journal of Emerging Trends in Computing and Information Science, March 2014.
2013
John Justine Villar and Adrian Roy Valdez
Theory and Practice of Computation. PICT Vol 7, Springer Japan, 2013. pp. 107 - 115.
Vena Pearl Bongolan, Valeria Lupiano, Donato D’Ambrosio, Rocco Rongo, William Spataro, and Giulio Iovine
European Geosciences Union General Assembly, April 7-12, 2013, Vienna
Vena Pearl Bongolan, Florencio Ballesteros, Karessa Alexandra Baritua, and Marie Junne Santos
European Geosciences Union General Assembly, April 7-12, 2013, Vienna
Jaymar Soriano, Ric Sapasap, Ted Chua, Nathan Santi, Ian Fontanilla and Adrian Roy Valdez
International Conference of Artificial Intelligence in Computer Science. Langkawi, Malaysia. November 2013.
Jaymar Soriano, Ryan Rondon, Angelo Meneses, Melissa Cardenas, Sandra Lim-Yap and Adrian Roy Valdez
International Conference of Artificial Intelligence in Computer Science. Langkawi, Malaysia. November 2013.
2012
Canseco, Roy Vincent L.; Bongolan, Vena Pearl
TENCON 2012 - 2012 IEEE Region 10 Conference , vol., no., pp.1-5, 19-22 Nov. 2012
doi: 10.1109/TENCON.2012.6412278
Jaymar Soriano and Laurent Dumas
TENCON (IEEE Region 10) 2012 Conference, Nov. 2012
Canseco, R. V. L., Bongolan, P. V., Tolod, K. R., & De Leon, R. L. (2012).
Proceedings of 19th Regional Symposium of Chemical Engineering.
2011
Karessa Alexandra O. Baritua, Marie Junne Santos and Vena Pearl Bongolan
Oral presentation at Model 2011, Oct. 20-22, Silliman University, Dumaguete, Philippines.
V.P. Bongolan, J. Duan, and G. Skountrianos
Presented at the Second International Conference on Random Dynamical Systems,
Nanjing Normal University, P.R. China, June 20-22, 2011, with a travel grant from DOST through the ERDT Consortium.
Modeling Vulnerability: a Genetic Algorithms Framework for Flood Minimization
Joyce Anne Banting, Aina Marie Olaes, Vena Pearl Bongolan, Charlymagne R. Aquino, and Florencio Ballesteros, Jr.
a poster presentation at the 11th Philippine Computing Science Congress (PCSC 2011), 4-5 March, Ateneo de Naga University, Philippines.
Marie Julliene Camille Sapuay, Fitz Patrick Galanida, Vena Pearl Bongolan
an oral presentation at the 3rd AUN/SEED-Net Regional Conference on Global Environment, 21-22 February, 2011, Kuala Lumpur.
2010
A.P. Mendoza, A.R.L. Valdez, C.P. Arceo
an oral presentation at the 2010 International Conference on Computer Software and Modeling (ICCSM 2010) in Manila, Philippines, 4-5 December , 2010
Aina Olaes, Joyce Banting, Vena Pearl Bongolan, Charlymagne R. Aquino, and Florencio Ballesteros, Jr.
an oral presentation at the 3rd Asean Civil and 3rd Asean Environmental Engineering Conferences, Manila, 11-12 November, 2010.
Joyce Banting, Aina Olaes, Vena Pearl Bongolan, Charlymagne R. Aquino, and Florencio Ballesteros, Jr.
an oral presentation at the 8th National Conference on IT Education (NCITE 2010) Boracay, Philippines, 20-23 October 2010.
A.P. Mendoza, A.R.L. Valdez, C.P. Arceo
an oral presentation at the 8th National Conference on IT Education (NCITE 2010) Boracay Island, Malay, Aklan, 20-23 October 2010.